Budget
Saam-Rot Thai & Vietnam Cafe Restaurant
Original Thai & Vietnamese food.
Takoyaki Stand
Nearby the McDonald's you'll see a small cart selling this strange but delicious snack: small pieces of octopus mixed into a sort of pancake batter and fried in small spheres. Watch as the elderly vendor liberally applies sauces, scallions and fish flakes. You get six for only ¥500 and it's a terrific snack after a night of sake and beer. Unfortunately there's no seats but no one will fault you for standing there and chowing down.
Midrange
Brusca
Excellent Italian bruschetta, bread topped with a variety of meat, cheese, vegetables and herbs. Wide selection of bottled beers, and 6 beers on tap. Second restaurant opened by the enthusiastic Stefano.
Botejyu
Botejyu is an okonomiyaki shop that sells a variety of okonomiyaki. They also have various yaki-soba dishes. Beware that at times, this restaurant can be busy with wait times of up to 30 min.
Bosphorus Hasan
Authentic Turkish food.
The Lockup
A Shinjuku original that has since spawned several branches elsewhere in Tokyo. It has a hybrid prison/dungeon/horror movie theme: customers are led to tables inside stone cells by waitresses in plastic-miniskirt police uniforms, where they are "locked up" and given menus filled with bizarre drinks the most well-known of which consists of a rack of test tubes filled with flavored syrups, a flask full of alcohol, and a beaker to mix everything in and relatively normal food. Twice every night, a "jailbreak" is staged in which the lights go out and costumed hoodlums scare the living daylights out of random patrons.
Yanbaru
There's nothing pretentious about this restaurant specializing in Okinawan food, which emphasizes pork and vegetables that are unusual even to Honshu Japanese. Recommend is beni imo ¥450, tempura-style sweet potato; and hechima misoni ¥600, an eggplant-like vegetable served in a strongly fermented miso sauce. A picture menu is available.
Juttoku
This izakaya has an excellent selection of sake.